Sample Models Cellzilla2D Home

Wuschel Expression in the Arabidopsis thaliana Shoot Apical Meristem (xlr8r/Cellzilla2D Deterministic Model)
Jönsson H, Heisler M, Reddy GV, Agrawal V, Gor V, Shapiro BE, Mjolsness E, Meyerowitz EM (2005) "Modeling the organization of the Wuschel domain in the shoot apical meristem," Bioinformatics 21(S1): i232-i240 (Citation)
WT simulation (nb.zip), (AVI movie
circular template, uses CelleratorNetwork.html
Ablated center (nb.zip) (AVI movie)
circular template , uses CelleratorNetwork.html
WT+Ablated (nb.zip) uses StaticSimulation

Repressilator
This is an example of a tissue with 100 cells and periodic boundary conditions, with a repressilator network in each cell. One of the species is allowed to diffuse between the cells so that the individual oscillators are linked. Initial conditions are random.
Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature. 403:335-338. Citation
Deterministic, Period BC (nb.zip)

Period BC Movie
Non-periodic BC Movie


[5 Jul 2013]