| SimShow SimShowAt SimShowFinal |
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Description
Return graphics images visulizing the results of a simulation, at a specific time, with the concentration of one particular species illustrated as a function of position. The concentration is represented by a range of colors, one color per cell.
Needs["Cellzilla2D`"];
Return Value
SimShow[solution, variable, time, template, {ColorMin, ColorMax}, {ValMin, ValMax}, options] returns a visualizaton at the specified time.
SimShow[solution, variable, time, template, {ColorMin, ColorMax}, {ValMin, ValMax}, options] returns a visualizaton at the specified time.
SimShowAt[solution, variable, time, template, {ColorMin, ColorMax}, threshold, options] - instead of interpolating between the two colors, choose the colors based on whether variable is greater or less than the threshold value.
SimShowAt[solution, variable, time, template, {ColorMin, ColorMax}, options] - plots a legend and autoscales the range.
SimShowFinal[solution, variable, template, {ColorMin, ColorMax}, options] - returns a visualization at the end time of the simulation. The legend is plotted and the range is autoscalled.
SimShowFinal[solution, variable, template, {ColorMin, ColorMax}, threshold, options] - returns a visualization at the end time of the simulation. Uses thresholding instead of interpolation. No legend.
solution - is the output of RunSim
variable - is any variable in the solution, e.g., if X is used, then the output will use the color of X[1][t] for cell 1, X[2][t] for cell 2, ...
template - is the template used to generate the reaction newtork with CelleratorNetwork.
{ColorMin, ColorMax} - Any two RGB colors; the color of of cell i is calculated from the value of X[i][t] using linear interpolation between ValMin and ValMax. Values less than the minimum or more than the maximum or plotted at ColorMin or ColorMax. These colors can either be color names such as Pink or RGB color specifications using RGBColor. A list of named colors can be found here.
Options
Example
[ Download Example as Zipped Mathematica Notebook ]
Implementation Notes
See Also